DNA | sequences | specimen
Endochironomus nigricans (Johannsen, 1905)
Animalia > Arthropoda > Insecta > Diptera > Chironomidae > Endochironomus

Identification

Accepted NameEndochironomus nigricans (Johannsen, 1905)
TaxonomyAnimalia > Arthropoda > Insecta > Diptera > Chironomidae > Endochironomus
Name According toSystema Dipterorum in: Catalogue of Life
Original NameEndochironomus nigricans Johannsen, 1905
Taxonomy Original NameAnimalia > Arthropoda > Insecta > Diptera > Chironomidae > Endochironomus > nigricans
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering Event

CountryCanada (Central or North America)
LocalitySmithers|Det San Ecoreserve|near 850 Viewmount Rd S
BiotopeGrassland
Collector(s)R.Pojar
Collector's numbers.n.
Collection Date2014-07-28/08-05
Collecting Sourcenot provided

DNA

GGBN IDhttp://devportal.ggbn.org/ggbndev_portal/2ZN0RW
GUID/Occurrence IDDNA-BIOUG22826-G01
Catalog NumberGMODL1039-15
Collection CodeBIOUG-DNA
Institution CodeUniversity of Guelph, Centre for Biodiversity Genomics
Institution Full NameCentre for Biodiversity Genomics
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided

Extraction

TypegDNA
StaffCCDB Laboratory Technician

Permits

Status: Permit available
Collecting Permit

Centre for Biodiversity Genomics - DNA for Canadian Specimens

DescriptionThe Centre for Biodiversity Genomics (CBG) at the University of Guelph is spearheading a novel approach to biodiversity research within Canada and internationally. Its three research units -- CBG Collections, CBG Genomics (or the Canadian Centre for DNA Barcoding, CCDB) and CBG Informatics -- are advancing 21st century biodiversity science by enabling species identification and discovery that is based on the analysis of sequence diversity in short, standardized gene regions, DNA barcodes. CBG Collections maintains a globally unique natural history collection of 3.3 million specimens. Every specimen is digitized, and the exact storage location of each specimen is tracked in a collection management information system for quick reference and retrieval. The databased information for every voucher is also archived in the Barcode of Life Data System (BOLD; www.boldsystems.org), permitting the permanent storage, validation and analysis of barcode sequence data and associated specimen metadata. Most (88.6%) of the specimens have been DNA barcoded, and a few representatives of every species have been digitally imaged. The CCDB holds high quality DNA extracts in a secure 2000 ft2 ultra-cold freezer bank. These DNA extracts reflect residual material following the barcode analysis of samples; it contains 5.3 million extracts from over 250,000 species derived from 231 countries, oceans and dependent territories, all connected to a voucher specimen on BOLD. This resource represents extractions held in the DNA Archive of the Canadian Centre for DNA Barcoding. They are derived from the Canadian specimens held in CBG Collections. Please direct inquiries to info@ccdb.ca
RightsTo the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
CitationTelfer A, Bessonov K, Zakharov EV and deWaard JR (2018): Centre for Biodiversity Genomics - DNA for Canadian Specimens. v1.8. University of Guelph. Dataset/Occurrence. https://ipt.uoguelph.ca/ipt/resource?r=public_data&v=1.8

Contacts

Associate Director - Genomics
Evgeny Zakharov, zakharov@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1, 15198244120
Data Management Lead - Collections
Angela Telfer, atelfer@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1, 15198244120
Associate Director - Collections
Jeremy deWaard, dewaardj@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1, 1519824412058125
Data Management Lead - Collections
Angela Telfer, atelfer@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1
Postdoctoral Fellow – Genomics
Kyrylo Bessonov, kbessono@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1
Associate Director – Genomics
Evgeny Zakharov, zakharov@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1
Research Scientist / Curator of DNA Archive – Genomics
Suresh Naik, snaik@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1
BOLD number(s)GMODL1039-15
ENA number(s)MG066804 (COI-5P)
NCBI number(s)MG066804 (COI-5P)

Identification

Accepted NameEndochironomus nigricans (Johannsen, 1905)
TaxonomyAnimalia > Arthropoda > Insecta > Diptera > Chironomidae > Endochironomus
Name According toSystema Dipterorum in: Catalogue of Life
Original NameEndochironomus nigricans Johannsen, 1905
Taxonomy Original NameAnimalia > Arthropoda > Insecta > Diptera > Chironomidae > Endochironomus > nigricans
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering Event

CountryCanada (Central or North America)
LocalitySmithers|Det San Ecoreserve|near 850 Viewmount Rd S
BiotopeGrassland
Collector(s)R.Pojar
Collector's numbers.n.
Collection Date2014-07-28/08-05
Collecting Sourcenot provided

Specimen

GGBN IDhttp://devportal.ggbn.org/ggbndev_portal/313RTY
GUID/Occurrence IDBIOUG22826-G01
Catalog NumberGMODL1039-15
Collection CodeBIOUG
Institution CodeUniversity of Guelph, Centre for Biodiversity Genomics
Institution Full NameCentre for Biodiversity Genomics
Record BasisPreservedSpecimen
Sample Typespecimen
Establishment Meansnot provided

Centre for Biodiversity Genomics - Canadian Specimens

DescriptionThe Centre for Biodiversity Genomics (CBG) at the University of Guelph is spearheading a novel approach to biodiversity research within Canada and internationally. Its three research units -- CBG Collections, CBG Genomics (or the Canadian Centre for DNA Barcoding, CCDB) and CBG Informatics -- are advancing 21st century biodiversity science by enabling species identification and discovery that is based on the analysis of sequence diversity in short, standardized gene regions, DNA barcodes. CBG Collections maintains a globally unique natural history collection of 3.3 million specimens. Every specimen is digitized, and the exact storage location of each specimen is tracked in a collection management information system for quick reference and retrieval. The databased information for every voucher is also archived in the Barcode of Life Data System (BOLD; www.boldsystems.org), permitting the permanent storage, validation and analysis of barcode sequence data and associated specimen metadata. Most (88.6%) of the specimens have been DNA barcoded, and a few representatives of every species have been digitally imaged. The CCDB holds high quality DNA extracts in a secure 2000 ft2 ultra-cold freezer bank. These DNA extracts reflect residual material following the barcode analysis of samples; it contains 5.3 million extracts from over 250,000 species derived from 231 countries, oceans and dependent territories, all connected to a voucher specimen on BOLD. This resource represents the Canadian specimens held in the Specimen Archives of CBG Collections as of Dec 2017. Please address inquiries to ccdbcol@uoguelph.ca
RightsThis work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License.
CitationTelfer A, Sones JE and deWaard JR (2018): Centre for Biodiversity Genomics - Canadian Specimens. v1.4. University of Guelph. Dataset/Occurrence. https://ipt.uoguelph.ca/ipt/resource?r=cbg_canadian_specimens&v=1.4

Contacts

Collections Manager
Jayme Sones, jsones@uoguelph.ca , 50 Stone Road East, Ontario CA, N1G 2W1, 15198244120
Data Management Lead, Collections
Angela Telfer, atelfer@uoguelph.ca , 50 Stone Road East, ON CA, N1G2W1, 15198244120
Associate Director, Collections
Jeremy deWaard, dewaardj@uoguelph.ca , 50 Stone Road East, ON CA, N1G 2W1, 5198244120
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Loan information

not blockedspecimen available for loan
not blockedDNA available for loan
Condition: Specimen available; contact CCDB for DNA availability
Disposition: In collection

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