GGBN Object - https://id.ggbn.org/32DAZT https://id.ggbn.org/32DAZT

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Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameAmycolatopsis pretoriensis Labeda et al., 2003
TaxonomyAmycolatopsis
Name According toProkaryotic Nomenclature Up-to-Date (PNU)
Original NameAmycolatopsis pretoriensis Labeda et al. 2003
Taxonomy Original NamePseudonocardiaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountrySouth Africa (Africa)
LocalityPretoria South Africa
Biotopeequine placenta
Collector(s)N/A
Collector's numbers.n.
Collection Datebefore 27.11.2002
Collecting Sourcecaptive/cultivated

DNA

Catalog NumberDSM 244654-19007
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsMasterPure (EPICENTRE)
Concentration44.08 ng/ µl
Ratio of Absorbance 260/2801.91

Sequences

ENA number(s)AY183356
NCBI number(s)AY183356

Publications

Labeda, DP. et al., 2003. Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas. International journal of systematic and evolutionary microbiology, 53(Pt 5), pp. 1601–1605

Actinomycete strains isolated from lesions on equine placentas from two horses in Kentucky and one in South Africa were subjected to a polyphasic taxonomic study. Chemotaxonomic and morphological characteristics indicated that the isolates are members of the genus AMYCOLATOPSIS: On the basis of phylogenetic analysis of 16S rDNA sequences, the isolates are related most closely to Amycolatopsis mediterranei. Physiological characteristics of these strains indicated that they do not belong to A. mediterranei and DNA relatedness determinations confirmed that these strains represent three novel species of the genus Amycolatopsis, for which the names Amycolatopsis kentuckyensis (type strain, NRRL B-24129(T)=LDDC 9447-99(T)=DSM 44652(T)), Amycolatopsis lexingtonensis (type strain, NRRL B-24131(T)=LDDC 12275-99(T)=DSM 44653(T)) and Amycolatopsis pretoriensis (type strain, NRRL B-24133(T)=ARC OV1 0181(T)=DSM 44654(T)) are proposed.

PubMed 4 GGBN records

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

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