GGBN Object - https://id.ggbn.org/32DC6V https://id.ggbn.org/32DC6V

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Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NamePseudokineococcus basanitobsidens Lee et al., 2017
TaxonomyBacillati > Actinomycetota > Actinomycetes > Kineosporiales > Kineosporiaceae > Pseudokineococcus
Name According toCatalogue of Life
Original NamePseudokineococcus basanitobsidens Lee et al. 2017
Taxonomy Original NameKineosporiaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryKorea, Republic of (Asia)
LocalityJeju, Seobjikoj
Collector(s)N/A
Collector's numbers.n.
Collection Date2013-07-24
Collecting Sourcenot provided

DNA

Catalog NumberDSM 303726-32180
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsMasterPure (EPICENTRE)
Concentration113 ng/ µl

Sequences

ENA number(s)KY244028
NCBI number(s)KY244028

Publications

Lee, DW. et al., 2017. Pseudokineococcus basanitobsidens sp. nov., isolated from volcanic rock. International journal of systematic and evolutionary microbiology, 67(10), pp. 3824–3828

A novel Gram-strain-positive, non-spore-forming bacterial strain, designated SKC1-2, was isolated from volcanic rock of the scoria cone of Seobjikoji, Jeju, Republic of Korea. Cells were aerobic, catalase-positive, oxidase-negative, motile and cocci. Colonies of cells were dark orange-coloured, circular, smooth and convex. Phylogenetic analyses based on 16S rRNA gene sequences indicated that the isolate was related to members of the genus Pseudokineococcus. Phylogenetic neighbours were P. marinus KCCM 42250 (98.2 %, 16S rRNA gene sequence similarity) and P. lusitanus DSM 23768 (98.0 %). The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The predominant respiratory quinone was MK-9(H2). The predominant respiratory quinone was MK-9(H2) and the major fatty acid was anteiso-C15 : 0. The polar lipid profile included major amounts of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, two unidentified phospholipids and two unidentified phosphoglycolipids. The DNA G+C content was 74.9 mol%. DNA-DNA relatedness values between strain SKC1-2 and P. lusitanus DSM 23768 or P. marinus KCCM 42250 were 37.5-38.1 % or 45.4-46.4 %, respectively. On the basis of the phenotypic differences and DNA-DNA relatedness data, the isolate represents a new species of the genus Pseudokineococcus, for which the name Pseudokineococcus basanitobsidens sp. nov. is proposed. The type strain is SKC1-2 (=DSM 103726=KCCM 43221).

PubMed

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

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