GGBN Object - https://id.ggbn.org/32DC5E https://id.ggbn.org/32DC5E

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Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameCorynebacterium gottingense Atasayar et al., 2017
TaxonomyBacillati > Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium
Name According toCatalogue of Life
Original NameCorynebacterium gottingense Atasayar et al. 2017
Taxonomy Original NameCorynebacteriaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryGermany (Europe)
LocalityGöttingen, Institut für Medizinische Mikrobiologie, University of Göttingen
Collector(s)N/A
Collector's numbers.n.
Collection Date11.05.2016
Collecting Sourcenot provided

DNA

Catalog NumberDSM 303494-32138
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsMasterPure (EPICENTRE)
Concentration86 ng/ µl

Sequences

ENA number(s)KY593177
NCBI number(s)KY593177

Publications

Atasayar, E. et al., 2017. Corynebacterium gottingense sp. nov., isolated from a clinical patient. International journal of systematic and evolutionary microbiology, 67(11), pp. 4494–4499

A Gram-positive bacterial strain, 99221/2016, was isolated from blood of a patient with bacteraemia at the Institute of Medical Microbiology, Göttingen, Germany. The strain was rod-shaped with a palisade arrangement of cells, non-spore-forming, non-lipophilic, catalase-positive and oxidase-negative. It grew well at 37 °C on Columbia blood agar and showed good growth under aerobic, microaerophilic and anaerobic conditions. The colonies were white-cream, circular and convex with a shiny, smooth surface. The predominant respiratory quinones were MK-8(H2) and MK-9(H2). The polar lipids profile contained phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol. Two unidentified phospholipids and several unidentified lipids were also detected. The prevalent cellular fatty acids comprised cis-9-octadecenoic acid (C18 : 1 ω9c), hexadecanoic acid (C16 : 0) and pentadecanoic acid (C15 : 0). Corynemycolates with 28-36 carbons in length were present. The whole-cell hydrolysate contained meso-diaminopimelic acid and arabinose, glucose, galactose and ribose as major sugars. Analysis of the 16S rRNA gene sequence identities revealed that the strain is most closely related to Corynebacterium imitans DSM 44264 (98.0 %), Corynebacterium lipophiloflavum DSM 44291 (96.9 %), Corynebacterium afermentans subsp. afermentans DSM 44280 (96.9 %) and Corynebacterium afermentans subsp. lipophilum DSM 44282 (96.8 %). The identity with Corynebacterium diphtheriae DSM 44123, the type species of the genus, was 94 %. The DNA G+C content was 69.2 mol%. DNA-DNA hybridization with Corynebacterium imitans DSM 44264 revealed a value of 34 %, confirming that the strain represents a novel species. The type strain 99221/2016 (DSM 103494=JCM 31931) is proposed to represent a novel species of the genus Corynebacterium with the name Corynebacterium gottingense.

PubMed 2 GGBN records

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

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