GGBN Object - https://id.ggbn.org/32DAXR https://id.ggbn.org/32DAXR

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Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameBlastococcus saxobsidens Urzì et al., 2004
TaxonomyBlastococcus
Name According toProkaryotic Nomenclature Up-to-Date (PNU)
Original NameBlastococcus saxobsidens Urzì et al. 2004 emend. Hezbri et al. 2016
Taxonomy Original NameGeodermatophilaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryMalta (Europe)
Biotopecalcarenite MA12
Collector(s)N/A
Collector's numbers.n.
Collection Datebefore 16.10.2000
Collecting Sourcecaptive/cultivated

DNA

Catalog NumberDSM 244509-19174
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsMasterPure (EPICENTRE)
Concentration188.26 ng/ µl
Ratio of Absorbance 260/2801.9

Sequences

ENA number(s)AJ316571
NCBI number(s)AJ316571

Publications

Urzì, C. et al., 2004. Blastococcus saxobsidens sp. nov., and emended descriptions of the genus Blastococcus Ahrens and Moll 1970 and Blastococcus aggregatus Ahrens and Moll 1970. International journal of systematic and evolutionary microbiology, 54(Pt 1), pp. 253–259

Ten Gram-positive, aerobic bacterial strains with coccoid cells occurring singly, in pairs, tetrads and small aggregates were isolated from the surface of marble and calcareous stones. The peptidoglycan contained meso-diaminopimelic acid as the diagnostic diamino acid. The major menaquinone was MK-9(H4). The cellular fatty acid pattern consisted mainly of iso-branched chain components. According to their phylogenetic position, the organisms are members of the family Geodermatophilaceae, clustering close to Blastococcus aggregatus DSM 4725T. Based on a combination of phenotypic, chemotaxonomic and genotypic characteristics, strain BC444T and seven relatives group apart from strains BC412 (=DSM 44517) and BC521 (=DSM 44518), which themselves form two individual lineages. DNA-DNA reassociation studies revealed that members of the three lineages were only remotely related to B. aggregatus DSM 4725T; as the strain-rich cluster containing BC444T shared low DNA similarity values with strains BC412 and BC521, it will be described as a novel species of Blastococcus, for which the name Blastococcus saxobsidens sp. nov. is proposed. The type strain is BC444T (=DSM 44509T=NRRL 24246T).

PubMed 3 GGBN records

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

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