GGBN Object - https://id.ggbn.org/32D4A0 https://id.ggbn.org/32D4A0

Get RDF

Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameWeeksella virosa Holmes et al., 1987
TaxonomyWeeksella
Name According toProkaryotic Nomenclature Up-to-Date (PNU)
Original NameWeeksella virosa Holmes et al. 1987 emend. Zhang et al. 2014 emend. Hahnke et al. 2016
Taxonomy Original NameFlavobacteriaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryUnited States (Central or North America)
LocalityNorth Carolina
Biotopehuman urine
Collector(s)N/A
Collector's numbers.n.
Collection Datebefore 18.11.2004
Collecting Sourcecaptive/cultivated

DNA

Catalog NumberDSM 216922-19316
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsMasterPure Gram Positive DNA Purification Kit (Epicentre MGP04100)
Concentration150 ng/ µl

Sequences

ENA number(s)M93152
NCBI number(s)M93152

Publications

Gherna, R. & Woese, CR., 1992. A partial phylogenetic analysis of the "flavobacter-bacteroides" phylum: basis for taxonomic restructuring. Systematic and applied microbiology, 15(4), pp. 513–21

On the basis of small subunit rRNA sequence analyses five major subgroups within the flavobacteria-bacteroides phylum have been defined. These are tentatively designated the cytophaga subgroup (comprising largely Cytophaga species), the flavobacter subgroup (comprising the true flavobacteria and the polyphyletic genus Weeksella), the bacteroides subgroup (comprising the bacteroides and certain cytophaga-like bacteria), the sphingobacter subgroup (which contains the known sphingolipid-producing members of the phylum), and the saprospira subgroup (comprising particular species of Flexibacter, Flavobacterium, Haliscomenobacter, and, of course, the genus Saprospira). These groupings are given not only by evolutionary distance analysis, but can be defined and distinguished on the basis of a simple small subunit rRNA signatures.

PubMed 9 GGBN records

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

Please visit the full record page in order to place a loan request

Go to GGBN record page