GGBN Object - https://id.ggbn.org/32D3CS https://id.ggbn.org/32D3CS

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Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameOleispira antarctica Yakimov et al., 2003
TaxonomyOleispira
Name According toProkaryotic Nomenclature Up-to-Date (PNU)
Original NameOleispira antarctica Yakimov et al. 2003
Taxonomy Original NameOceanospirillaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryAntarctica (Antarctica)
Sea/OceanRoss Sea (Southern Ocean)
LocalityRoss sea, Rod Bay
Biotopeseawater
Collector(s)N/A
Collector's numbers.n.
Collection Datebefore 06.03.2002
Collecting Sourcecaptive/cultivated

DNA

Catalog NumberDSM 214852-25765
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsJETFLEX (GENOMED GmbH)
Concentration255 ng/ µl
Ratio of Absorbance 260/2801.77

Sequences

ENA number(s)AJ426420
NCBI number(s)AJ426420

Publications

Yakimov, MM. et al., 2003. Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water. International journal of systematic and evolutionary microbiology, 53(Pt 3), pp. 779–785

The taxonomic characteristics of two bacterial strains, RB-8(T) and RB-9, isolated from hydrocarbon-degrading enrichment cultures obtained from Antarctic coastal marine environments (Rod Bay, Ross Sea), were determined. These bacteria were psychrophilic, aerobic and Gram-negative with polar flagella. Growth was not observed in the absence of NaCl, occurred only at concentrations of Na+ above 20 mM and was optimal at an NaCl concentration of 3-5% (w/v). The major cellular fatty acids were monounsaturated straight-chain fatty acids. The strains were able to synthesize the polyunsaturated fatty acid eicosapentaenoic acid (20: 5omega3) at low temperatures. The DNA G + C contents were 41-42 mol%. The strains formed a distinct phyletic line within the gamma-Proteobacteria, with less than 89.6% sequence identity to their closest relatives within the Bacteria with validly published names. Both isolates exhibited a restricted substrate profile, with a preference for aliphatic hydrocarbons, that is typical of marine hydrocarbonoclastic micro-organisms such as Alcanivorax, Marinobacter and Oleiphilus. On the basis of ecophysiological properties, G + C content, 16S rRNA gene sequences and fatty acid composition, a novel genus and species within the gamma-Proteobacteria are proposed, Oleispira antarctica gen. nov., sp. nov.; strain RB-8(T) (= DSM 14852(T) = LMG 21398(T)) is the type strain.

PubMed 2 GGBN records

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

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