GGBN Object - https://id.ggbn.org/32D2BD https://id.ggbn.org/32D2BD

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Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameAbiotrophia defectiva (Bouvet et al., 1989) Kawamura et al., 1995
TaxonomyAbiotrophia
Name According toProkaryotic Nomenclature Up-to-Date (PNU)
Original NameAbiotrophia defectiva (Bouvet et al. 1989) Kawamura et al. 1995
Taxonomy Original NameAerococcaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryFrance (Europe)
Biotopeblood of bacterial endocarditis patient
Collector(s)N/A
Collector's numbers.n.
Collection Datebefore 1989
Collecting Sourcecaptive/cultivated

DNA

Catalog NumberDSM 209849-34398
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsQuiagen
Concentration167 ng/ µl

Sequences

ENA number(s)D50541
NCBI number(s)D50541

Publications

Kawamura, Y. et al., 1995. Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., respectively. International journal of systematic bacteriology, 45(4), pp. 798–803

We performed this study to determine the 16S rRNA sequences of the type strains of Streptococcus adjacens and Streptococcus defectivus and to calculate the phylogenetic distances between these two nutritionally variant streptococci (NVS) and other members of the genus Streptococcus. S. adjacens and S. defectivus belonged to one cluster, but this cluster was not closely related to other streptococcal species. A comparative analysis of the sequences of these organisms and other low-G+C-content gram-positive bacteria revealed that the two NVS species formed a distinct cluster and were only remotely related to the Aerococcus and Carnobacterium clusters. The highest level of homology (93.7%) was found between S. adjacens and Carnobacterium divergens. Carnobacterium species have meso-diaminopimelic acid in their cell walls, but S. adjacens and S. defectivus have L-lysine as the diamino acid at position 3 in their peptidoglycan tetrapeptides. On the basis of our findings and the results of previous phenotypic studies, we propose that the NVS species should be placed in a new genus, the genus Abiotrophia, as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov.

PubMed 2 GGBN records

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

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