GGBN Object - https://id.ggbn.org/32D0VB https://id.ggbn.org/32D0VB

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Material Entity: DNA

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameHalanaerobium praevalens Zeikus et al., 1984
TaxonomyHalanaerobium
Name According toProkaryotic Nomenclature Up-to-Date (PNU)
Original NameHalanaerobium praevalens Zeikus et al. 1984
Taxonomy Original NameHalanaerobiaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryUnited States (Central or North America)
Sea/OceanGreat Salt Lake (Landlocked Sea)
LocalityGreat Salt Lake
Biotopesediment
Collector(s)N/A
Collector's numbers.n.
Collection Datebefore 08.12.1981
Collecting Sourcecaptive/cultivated

DNA

Catalog NumberDSM 202228-19322
Collection CodeDNA Bank
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisMaterialSample
Sample TypeDNA
Establishment Meansnot provided
Type Statustype strain
Preservationfresh

Extraction

MaterialsMasterPure Gram Positive DNA Purification Kit (Epicentre MGP04100)
Concentration208 ng/ µl

Sequences

ENA number(s)CP002175
NCBI number(s)CP002175

Publications

Ivanova, N. et al., 2011. Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). Standards in genomic sciences, 4(3), pp. 312–21

Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce a variety of nitro-substituted aromatic compounds at a high rate, and because of its ability to degrade organic pollutants. The strain is also of interest because it functions as a hydrolytic bacterium, fermenting complex organic matter and producing intermediary metabolites for other trophic groups such as sulfate-reducing and methanogenic bacteria. It is further reported as being involved in carbon removal in the Great Salt Lake, its source of isolation. This is the first completed genome sequence of a representative of the genus Halanaerobium and the second genome sequence from a type strain of the family Halanaerobiaceae. The 2,309,262 bp long genome with its 2,110 protein-coding and 70 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

PubMed

Dataset Description

DNA Bank of the DSMZ

DescriptionThe DNA Bank of the DSMZ-German Collection of Microorganisms and Cell Cultures holds currently a collection of ca 2800 DNA samples mainly derived from the type strains of bacterial and archaeal species. The DNA bank is part of the DNA Bank Network which was established in spring 2007 and is currently funded by the DFG. The network was initiated by GBIF Germany and provides a technically optimized DNA collection service facility for all biological research accessible via one central web portal. The network promotes deposition of well documented reference DNA samples after project completion or data publication from scientists of other universities and institutions.
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Cathrin Spröer, ckc@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 0531 2616227
Technical
Christian Ebeling, christian.ebeling@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49-531-2616-383
no coordinates provided

Loan information

not blocked DNA available for loan

Disposition: In collection

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