GGBN Object - https://id.ggbn.org/2ZCPAS https://id.ggbn.org/2ZCPAS

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Material Entity: culture

Disposition: In collection

Identifier Status: ACTIVE

Last Update: January 29, 2025

Identification

Accepted NameAbiotrophia defectiva (Bouvet et al., 1989) Kawamura et al., 1995
TaxonomyAbiotrophia
Name According toProkaryotic Nomenclature Up-to-Date (PNU)
Original NameAbiotrophia defectiva (Bouvet et al. 1989) Kawamura et al. 1995
Taxonomy Original NameBacteria > Aerococcaceae
Status Original Nameaccepted species
Resolving Stateresolved on species level

Gathering

CountryUnknown
Biotopeblood of bacterial endocarditis patient
Collector(s)N/A
Collector's numbers.n.
Collection DateN/A
Collecting Sourcecaptive/cultivated

Culture

Catalog NumberDSM 9849
Collection CodeProkarya
Institution CodeDSMZ
Institution Full NameLeibniz Institute DSMZ
Record BasisLivingSpecimen
Sample Typeculture
Establishment Meansnot provided
Type StatusType

Preparation

Type(vacuum) dried culture

Sequences

ENA number(s)D50541
NCBI number(s)D50541

Publications

Kawamura, Y. et al., 1995. Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., respectively. International journal of systematic bacteriology, 45(4), pp. 798–803

We performed this study to determine the 16S rRNA sequences of the type strains of Streptococcus adjacens and Streptococcus defectivus and to calculate the phylogenetic distances between these two nutritionally variant streptococci (NVS) and other members of the genus Streptococcus. S. adjacens and S. defectivus belonged to one cluster, but this cluster was not closely related to other streptococcal species. A comparative analysis of the sequences of these organisms and other low-G+C-content gram-positive bacteria revealed that the two NVS species formed a distinct cluster and were only remotely related to the Aerococcus and Carnobacterium clusters. The highest level of homology (93.7%) was found between S. adjacens and Carnobacterium divergens. Carnobacterium species have meso-diaminopimelic acid in their cell walls, but S. adjacens and S. defectivus have L-lysine as the diamino acid at position 3 in their peptidoglycan tetrapeptides. On the basis of our findings and the results of previous phenotypic studies, we propose that the NVS species should be placed in a new genus, the genus Abiotrophia, as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov.

PubMed 2 GGBN records

Dataset Description

DSMZ Prokarya Collection Catalogue

DescriptionThe catalogue contains all strains (of the Bacteria and Archaea collection)
RightsThe copyright for any material created by the DSMZ is reserved. The duplication or use of information and data such as texts or images is only permitted with the indication of the source or with prior approval by the DSMZ.

Contacts

Administrative
Dr. Dorothea Gleim, dgl@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 531 2616317
Technical
Carola Söhngen, cas11@dsmz.de , Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7 B, 38124 Braunschweig, GERMANY, +49 531 2616 373
no coordinates provided

Loan information

not blocked culture available for loan

Disposition: In collection

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